VMD (分子可视化软件)

LINUX_64 OpenGL, CUDA (Linux (64-bit Intel/AMD x86) with CUDA)

安装过程

(1)修改configure文件

$install_bin_dir=/home/＊＊/vmd/bin

$install_library_dir=/home/**/vmd/lib

(2)./configure

(3)cd src

make install

显示 :make sure /home/yc/vmd in your path

VMD installation complete.Enjoy!

(4)cp /home/**/vmd/bin/vmd /usr/local/bin

(5)vmd即可以出现图形界面

【作者】 Biophysics Group,University of Illinois at Urbana-Champaign (UIUC)

【语言版本】 English

【收费情况】  免费

【用途】 VMD is a molecular visualization

program for displaying, animating, and analyzing large biomolecular

systems using 3-D graphics and built-in scripting. VMD supports

computers running MacOS-X, Unix, or Windows, is distributed free of

charge, and includes source code.

VMD is designed for the visualization and

analysis of biological systems such as proteins, nucleic acids, lipid

bilayer assemblies, etc. It may be used to view more general molecules,

as VMD can read standard Protein Data Bank (PDB) files and display the

contained structure. VMD provides a wide variety of methods for

rendering and coloring a molecule: simple points and lines, CPK spheres

and cylinders, licorice bonds, backbone tubes and ribbons, cartoon

drawings, and others. VMD can be used to animate and analyze the

trajectory of a molecular dynamics (MD) simulation. In particular, VMD

can act as a graphical front end for an external MD program by

displaying and animating a molecule undergoing simulation on a remote

computer. VMD uses OpenGL to provide high performance 3-D molecular

graphics。

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链接地址：http://blog.sciencenet.cn/blog-316926-482506.html

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