医学自然语言处理(NLP)相关论文汇总之 NAACL 2021

【写在前面】NAACL2021前段时间已经放榜，自己抽时间整理了一下该会议在医疗自然语言处理方向上的相关论文，放在这里，希望对大家有一定的帮助吧。还会继续更新，大家有兴趣的话可以持续关注。最近在阅读一篇文本分类综述，心生了一个复现里面代码和整理数据集的想法，目前正在稳步推荐，感兴趣的同学可以参考我的文本分类GitHub链接。汇总文本分类方法的目的是为了让大家更容易地在自己的数据集上跑baseline模型。

更多关于中文医疗自然语言处理的资源和论文汇总，请访问我的GitHub相关主页https://github.com/NiceSkyWang/Chinese_Medical_Natural_Language_Processing_Resources_and_Papers。最近重新整理一下仓库，把对应会议的论文的PDF汇总下载，有需要的可以直接从仓库下载。
文本分类baseline仓库链接：https://github.com/LovelyDayWang/Summary-of-Text-Classification-Models-PyTorch，欢迎star～

本体

The Biomaterials Annotator: a system for ontology-based concept annotation of biomaterials text

论文地址：https://aclanthology.org/2021.sdp-1.5/

疾病分类

Towards BERT-based Automatic ICD Coding: Limitations and Opportunities

论文地址：https://aclanthology.org/2021.bionlp-1.6/

小样本学习

Scalable Few-Shot Learning of Robust Biomedical Name Representations

论文地址：https://aclanthology.org/2021.bionlp-1.3/

规范化

Triplet-Trained Vector Space and Sieve-Based Search Improve Biomedical Concept Normalization

论文地址：https://aclanthology.org/2021.bionlp-1.2/

预训练模型

UmlsBERT: Clinical Domain Knowledge Augmentation of Contextual Embeddings Using the Unified Medical Language System Metathesaurus

论文地址：https://aclanthology.org/2021.naacl-main.139/

Self-Alignment Pretraining for Biomedical Entity Representations

论文地址：https://aclanthology.org/2021.naacl-main.334/

Are we there yet? Exploring clinical domain knowledge of BERT models

论文地址：https://aclanthology.org/2021.bionlp-1.5/

Stress Test Evaluation of Biomedical Word Embeddings

论文地址：https://aclanthology.org/2021.bionlp-1.13/

BioELECTRA:Pretrained Biomedical text Encoder using Discriminators

论文地址：https://aclanthology.org/2021.bionlp-1.16/

Improving Biomedical Pretrained Language Models with Knowledge

论文地址：https://aclanthology.org/2021.bionlp-1.20/

EntityBERT: Entity-centric Masking Strategy for Model Pretraining for the Clinical Domain

论文地址：https://aclanthology.org/2021.bionlp-1.21/

ChicHealth @ MEDIQA 2021: Exploring the limits of pre-trained seq2seq models for medical summarization

论文地址：https://aclanthology.org/2021.bionlp-1.29/

命名实体识别

Exploring Word Segmentation and Medical Concept Recognition for Chinese Medical Texts

论文地址：https://aclanthology.org/2021.bionlp-1.23/

因果关系

Are we there yet? Exploring clinical domain knowledge of BERT models

论文地址：https://aclanthology.org/2021.bionlp-1.5/

关系抽取

Improving BERT Model Using Contrastive Learning for Biomedical Relation Extraction

论文地址：https://aclanthology.org/2021.bionlp-1.1/

实体链接

Clustering-based Inference for Biomedical Entity Linking

论文地址：https://aclanthology.org/2021.naacl-main.205/

End-to-end Biomedical Entity Linking with Span-based Dictionary Matching

论文地址：https://aclanthology.org/2021.bionlp-1.18/

Word-Level Alignment of Paper Documents with their Electronic Full-Text Counterparts

论文地址：https://aclanthology.org/2021.bionlp-1.19/

语言模型

BioM-Transformers: Building Large Biomedical Language Models with BERT, ALBERT and ELECTRA

论文地址：https://aclanthology.org/2021.bionlp-1.24/

Semi-Supervised Language Models for Identification of Personal Health Experiential from Twitter Data: A Case for Medication Effects

论文地址：https://aclanthology.org/2021.bionlp-1.25/

Assertion Detection in Clinical Notes: Medical Language Models to the Rescue?

论文地址：https://aclanthology.org/2021.nlpmc-1.5/

摘要生成

UETrice at MEDIQA 2021: A Prosper-thy-neighbour Extractive Multi-document Summarization Model

论文地址：https://aclanthology.org/2021.bionlp-1.36/

IBMResearch at MEDIQA 2021: Toward Improving Factual Correctness of Radiology Report Abstractive Summarization

论文地址：https://aclanthology.org/2021.bionlp-1.35/

Optum at MEDIQA 2021: Abstractive Summarization of Radiology Reports using simple BART Finetuning

论文地址：https://aclanthology.org/2021.bionlp-1.32/

MNLP at MEDIQA 2021: Fine-Tuning PEGASUS for Consumer Health Question Summarization

论文地址：https://aclanthology.org/2021.bionlp-1.37/

UETfishes at MEDIQA 2021: Standing-on-the-Shoulders-of-Giants Model for Abstractive Multi-answer Summarization

论文地址：https://aclanthology.org/2021.bionlp-1.38/

Towards Automating Medical Scribing : Clinic Visit Dialogue2Note Sentence Alignment and Snippet Summarization

论文地址：https://aclanthology.org/2021.nlpmc-1.2/

paht_nlp @ MEDIQA 2021: Multi-grained Query Focused Multi-Answer Summarization

论文地址：https://aclanthology.org/2021.bionlp-1.10/

事件抽取

Counterfactual Supporting Facts Extraction for Explainable Medical Record Based Diagnosis with Graph Network

论文地址：https://aclanthology.org/2021.naacl-main.156/

迁移学习

UCSD-Adobe at MEDIQA 2021: Transfer Learning and Answer Sentence Selection for Medical Summarization

论文地址：https://aclanthology.org/2021.bionlp-1.28/

SB_NITK at MEDIQA 2021: Leveraging Transfer Learning for Question Summarization in Medical Domain

论文地址：https://aclanthology.org/2021.bionlp-1.31/

NLM at MEDIQA 2021: Transfer Learning-based Approaches for Consumer Question and Multi-Answer Summarization

论文地址：https://aclanthology.org/2021.bionlp-1.34/

数据集

emrKBQA: A Clinical Knowledge-Base Question Answering Dataset

论文地址：https://aclanthology.org/2021.bionlp-1.7/

多模态

QIAI at MEDIQA 2021: Multimodal Radiology Report Summarization

论文地址：https://aclanthology.org/2021.bionlp-1.33/

对话

Overview of the MEDIQA 2021 Shared Task on Summarization in the Medical Domain

论文地址：https://aclanthology.org/2021.bionlp-1.8/

WBI at MEDIQA 2021: Summarizing Consumer Health Questions with Generative Transformers

论文地址：https://aclanthology.org/2021.bionlp-1.9/

Gathering Information and Engaging the User ComBot: A Task-Based, Serendipitous Dialog Model for Patient-Doctor Interactions

论文地址：https://aclanthology.org/2021.nlpmc-1.3/

Extracting Appointment Spans from Medical Conversations

论文地址：https://aclanthology.org/2021.nlpmc-1.6/

Building blocks of a task-oriented dialogue system in the healthcare domain

论文地址：https://aclanthology.org/2021.nlpmc-1.7/

Medically Aware GPT-3 as a Data Generator for Medical Dialogue Summarization

论文地址：https://aclanthology.org/2021.nlpmc-1.9/

文本生成

BBAEG: Towards BERT-based Biomedical Adversarial Example Generation for Text Classification

论文地址：https://aclanthology.org/2021.naacl-main.423/

问答

NCUEE-NLP at MEDIQA 2021: Health Question Summarization Using PEGASUS Transformers

论文地址：https://aclanthology.org/2021.bionlp-1.30/

damo_nlp at MEDIQA 2021: Knowledge-based Preprocessing and Coverage-oriented Reranking for Medical Question Summarization

论文地址：https://aclanthology.org/2021.bionlp-1.12/

表示学习

Word centrality constrained representation for keyphrase extraction

论文地址：https://aclanthology.org/2021.bionlp-1.17/

Others

Contextual explanation rules for neural clinical classifiers

论文地址：https://aclanthology.org/2021.bionlp-1.22/

Context-aware query design combines knowledge and data for efficient reading and reasoning

论文地址：https://aclanthology.org/2021.bionlp-1.26/

Measuring the relative importance of full text sections for information retrieval from scientific literature.

论文地址：https://aclanthology.org/2021.bionlp-1.27/

Automatic Speech-Based Checklist for Medical Simulations

论文地址：https://aclanthology.org/2021.nlpmc-1.4/

Joint Summarization-Entailment Optimization for Consumer Health Question Understanding

论文地址：https://aclanthology.org/2021.nlpmc-1.8/

Detecting Anatomical and Functional Connectivity Relations in Biomedical Literature via Language Representation Models

论文地址：https://aclanthology.org/2021.sdp-1.4/

BDKG at MEDIQA 2021: System Report for the Radiology Report Summarization Task

论文地址：https://aclanthology.org/2021.bionlp-1.11/